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KW group's Flowty
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KW group's Flowty
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Visualizations
General
Gating
Clustering QC
Download Results
Download Flowty zip
Download data tables
Dataset:
Log2-transform MFI
Cluster set:
Plate heatmaps
PCA
UMAP
Channels line plot
Clusters bar plot
Data for well color:
Variable for well color:
Size points by:
Total events
None
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Data for PCA:
Data for well color:
Variable for well color:
Size points by:
Total events
None
Color points by:
Color variable
Plate
X axis:
Y axis:
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Data for UMAP:
Data for well color:
Variable for well color:
Size points by:
Total events
None
Color points by:
Color variable
Plate
X axis:
Y axis:
Neighbors:
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Data for lines:
MFI
Log2FC vs all wells
Log2FC vs control
Datasets:
Channels:
X labels:
Well ID & compound
Well ID
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Data for bars:
% in well
Count in well
Clusters:
X labels:
Well ID & compound
Well ID
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Clicked wells table
Columns for clicked wells table:
well_id
compound
events
concentration
condition
plate
Remove selected wells
Remove all wells
Sample events for scatterplot
Group events by:
Events per group:
Transformation:
Logicle
Log2
Log10
None
Center
Scale
Plot scatterplot
Scatterplot
Channel X:
Channel Y:
Color points by:
Group
Density
Point size:
6
8
10
12
14
16
18
20
Plot width:
Auto
600
700
800
900
1000
1100
1200
1300
1400
1500
1600
Plot height:
600
700
800
900
1000
1100
1200
1300
1400
1500
1600
Cluster set:
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SOM nodes
DA heatmap
Channel:
Arrangement:
Grid
MST
SOM nodes size:
Number of cells
None
SOM nodes background:
Compound:
P threshold:
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Export as PDF:
Star plot
Marker plot
Clusters heatmap
Download plot as PDF
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Cluster size:
Counts
Percent
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P threshold:
0.0001
0.001
0.01
0.05
0.10
% significant SOM nodes:
Row order:
Total significant
Dendrogram
Column order:
Total counts
Dendrogram
Width:
Auto
800
1000
1200
1400
1600
1800
2000
2200
2400
2600
2800
3000
Right margin:
Abundance heatmap rows:
Average
By well
Compound for abundance heatmap:
Download plot as PDF
Rank algorithms for K:
Significance tests
PAC scores
Validity indices
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Algorithm:
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Algorithm:
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Include Quality Control reports (WARNING: Will make the ZIP file heavier).
Download all data
Annotation
Annotation flagged
Channels
QC report
Screen summary
Cluster summary
Cluster cell counts
Cluster P values
DA tests
Save tables
Save table
Save table
Save table
Save table
Save table
Save table
Save table
Save table
Save table
Tables to save:
Annotation
Annotation flagged
Channels
QC report
Screen summary
Cluster summary
Cluster cell counts
Cluster P values
DA tests
Save
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